Response of rhizosphere bacterial community of Taxus chinensis var. mairei to temperature changes


Autoři: Xianghua Yu aff001;  Xinxing Liu aff001;  Xueduan Liu aff001
Působiště autorů: School of Minerals Processing and Bioengineering, Central South University, Changsha, China aff001;  Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha, China aff002;  Key Laboratory of Hunan Province for Comprehensive Utilization of Superiority Plant Resources in Southern Hunan, Hunan University of Science and Engineering, Yongzhou, Hunan, China aff003
Vyšlo v časopise: PLoS ONE 14(12)
Kategorie: Research Article
doi: 10.1371/journal.pone.0226500

Souhrn

Background

Temperature is a key factor influencing the growth and distribution of Taxus chinensis var. mairei, which is of high medicinal value. However, there is little information about the changes in rhizosphere bacterial community of Taxus chinensis var. maire under different temperatures.

Methods

In this study, the rhizosphere bacterial communities of Taxus chinensis var. maire under a series of temperatures [5°C (T5), 15°C (T15), 25°C (T25), 35°C (T35)] were assessed through high-throughput sequencing. And some taxa annotated as Mitochondria were positively correlated with the activity of SOD.

Results

Activity of peroxidase (POD) and superoxide dismutase (SOD) were increased and decreased respectively with increasing incubation temperature, showing that SOD may be the dominant reactive oxygen species (ROS) detoxifying enzyme in Taxus chinensis var. maire under low temperature. Taxus chinensis var. maire enriched specific bacterial taxa in rhizosphere under different temperature, and the rhizosphere bacterial diversity decreased with increasing temperature.

Conclusion

The results indicated that rhizosphere bacteria may play important role for Taxus chinensis var. maire in coping with temperature changes, and the management of rhizosphere bacteria in a potential way to increase the cold resistance of Taxus chinensis var. mairei, thus improving its growth under low temperature and enlarging its habitats.

Klíčová slova:

Bacteria – Leaves – Medicinal plants – Plant resistance to abiotic stress – Rhizosphere – Sequence databases – Superoxide dismutase – Thermal stresses


Zdroje

1. Li C, Huo C, Zhang M, Shi Q(2008)Chemistry of Chinese yew, Taxus chinensis var. mairei. Biochemical Systematics and Ecology 36: 266–282.

2. Yu JH, Wang YB, Qian H, Zhao YP, Liu BT, et al.(2012)Polyprenols from the needles of Taxus chinensis var. mairei. Fitoterapia 83:831–837. doi: 10.1016/j.fitote.2012.01.007 22305943

3. Zhang JT, Ru WM(2010)Population characteristics of endangered species Taxus chinensis var. mairei and its conservation strategy in Shanxi, China. Population Ecology 52: 407–416.

4. Woodward FI(1988)Temperature and the distribution of plant species. Symp Soc Exp Biol 42: 59–75. 3270209

5. Ruelland E, Vaultier MN, Zachowski A, Hurry V(2009)Chapter 2 Cold Signalling and Cold Acclimation in Plants, Advances in Botanical Research. Academic Press, pp. 35–150.

6. Sen A, Alikamanoglu S(2013)Antioxidant enzyme activities, malondialdehyde, and total phenolic content of PEG-induced hyperhydric leaves in sugar beet tissue culture. In Vitro Cellular & Developmental Biology—Plant 49:396–404.

7. Szőllősi R(2014)Chapter 3—Superoxide Dismutase (SOD) and Abiotic Stress Tolerance in Plants: An Overview, In: Ahmad P. (Ed.), Oxidative Damage to Plants. Academic Press, San Diego, pp 89–129.

8. Chovanová K, Kamlárová A, Maresch D, Harichová J, Zámocký M(2019)Expression of extracellular peroxidases and catalases in mesophilic and thermophilic Chaetomia in response to environmental oxidative stress stimuli. Ecotoxicology and Environmental Safety 181: 481–490. doi: 10.1016/j.ecoenv.2019.06.035 31228824

9. Palva ET, Welling A, Tahtiharju S, Tamminen I, Puhakainen T, et al.(2001)Cold acclimation and development of freezing and drought tolerance in plants. Proceedings of the 4th International Symposium on in Vitro Culture and Horticultural Breeding, 277–284.

10. Gusta LV, Trischuk R, Weiser CJ(2005)Plant Cold Acclimation: The Role of Abscisic Acid. Journal of Plant Growth Regulation 24:308–318.

11. Thomashow MF(1999)PLANT COLD ACCLIMATION: Freezing Tolerance Genes and Regulatory Mechanisms. Annu Rev Plant Physiol Plant Mol Biol 50:571–599. doi: 10.1146/annurev.arplant.50.1.571 15012220

12. Huang YL, Jin DS, Lu CF, Lan XZ, Qiao P, et al.(2016) Proteomic responses associated with freezing tolerance in the callus of the Tibetan alpine plant Saussurea laniceps during cold acclimation. Plant Cell Tissue and Organ Culture 124:81–95.

13. Shi Y, Ding Y, Yang S(2018)Molecular Regulation of CBF Signaling in Cold Acclimation. Trends in Plant Science 23:623–637. doi: 10.1016/j.tplants.2018.04.002 29735429

14. Kim MH, Sasaki K, Imai R(2009)Cold Shock Domain Protein 3 Regulates Freezing Tolerance in Arabidopsis thaliana. Journal of Biological Chemistry 284:23454–23460. doi: 10.1074/jbc.M109.025791 19556243

15. Lee CM, Thomashow MF(2012)Photoperiodic regulation of the C-repeat binding factor (CBF) cold acclimation pathway and freezing tolerance in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 109:15054–15059. doi: 10.1073/pnas.1211295109 22927419

16. Mishra PK, Joshi P, Bisht SC, Bisht JK, Selvakumar G(2011) Cold-Tolerant Agriculturally Important Microorganisms, In: Maheshwari D.K. (Ed.), Plant Growth and Health Promoting Bacteria. Springer Berlin Heidelberg, Berlin, Heidelberg, pp 273–296.

17. Wu J, Xiong J, Hu C, Shi Y, Wang K, et al.(2015)Temperature sensitivity of soil bacterial community along contrasting warming gradient. Applied Soil Ecology 94: 40–48.

18. Barria C, Malecki M, Arraiano CM(2013)Bacterial adaptation to cold. Microbiology-Sgm 159:2437–2443.

19. Koyama A, Steinweg JM, Haddix ML, Dukes JS, Wallenstein MD(2018)Soil bacterial community responses to altered precipitation and temperature regimes in an old field grassland are mediated by plants. FEMS Microbiol Ecol 94(1).

20. Hayat R, Ali S, Amara U, Khalid R, Ahmed I(2010)Soil beneficial bacteria and their role in plant growth promotion: a review. Annals of Microbiology 60:579–598.

21. Mishra PK, Bisht SC, Ruwari P, Selvakumar G, Joshi GK, et al.(2011)Alleviation of cold stress in inoculated wheat (Triticum aestivum L.) seedlings with psychrotolerant Pseudomonads from NW Himalayas. Archives of Microbiology 193: 497–513. doi: 10.1007/s00203-011-0693-x 21442319

22. AitBarka E, Nowak J, Clement C(2006)Enhancement of chilling resistance of inoculated grapevine plantlets with a plant growth-promoting rhizobacterium, Burkholderia phytofirmans strain PsJN. Appl Environ Microbiol 72:7246–7252. doi: 10.1128/AEM.01047-06 16980419

23. Mishra PK, Mishra S, Bisht SC, Selvakumar G, Kundu S, et al. (2009)Isolation, molecular characterization and growth-promotion activities of a cold tolerant bacterium Pseudomonas sp NARs9 (MTCC9002) from the Indian Himalayas. Biological Research 42:305–313. 19915739

24. Barka EA, Nowak J, Clement C(2006)Enhancement of chilling resistance of inoculated grapevine plantlets with a plant growth-promoting rhizobacterium, Burkholderia phytofirmans strain PsJN. Applied and Environmental Microbiology 72: 7246–7252. doi: 10.1128/AEM.01047-06 16980419

25. Ahkami A.H, Allen WR, Handakumbura PP, Jansson C(2017)Rhizosphere engineering: Enhancing sustainable plant ecosystem productivity. Rhizosphere 3:233–243

26. Mishra PK, Bisht SC, Bisht JK, Bhatt JC(2012) Cold-Tolerant PGPRs as Bioinoculants for Stress Management, In: Maheshwari D.K. (Ed.), Bacteria in Agrobiology: Stress Management. Springer Berlin Heidelberg, Berlin, Heidelberg, pp. 95–118.

27. Yang J, Kloepper JW, Ryu CM(2009)Rhizosphere bacteria help plants tolerate abiotic stress. Trends in Plant Science 14(1):0–4.

28. De-la-Peña C, Loyola-Vargas VM(2014)Biotic Interactions in the Rhizosphere: A Diverse Cooperative Enterprise for Plant Productivity. Plant Physiology 166:701–719. doi: 10.1104/pp.114.241810 25118253

29. Subramanian P, Kim K, Krishnamoorthy R, Mageswari A, Selvakumar G, et al. (2016)Cold Stress Tolerance in Psychrotolerant Soil Bacteria and Their Conferred Chilling Resistance in Tomato (Solanum lycopersicum Mill.) under Low Temperatures. PloS one 11: e0161592–e0161592. doi: 10.1371/journal.pone.0161592 27580055

30. McPherson MR, Wang P, Marsh EL, Mitchell RB, Schachtman DP(2018)Isolation and Analysis of Microbial Communities in Soil, Rhizosphere, and Roots in Perennial Grass Experiments. JoVE, e57932.

31. Sun R.B, Li WY, Dong WX, Tian YP, Hu C.S, et al.(2018)Tillage Changes Vertical Distribution of Soil Bacterial and Fungal Communities. Front Microbiol 9:699. doi: 10.3389/fmicb.2018.00699 29686662

32. Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, et al.(2010)QIIME allows analysis of high-throughput community sequencing data. Nature Methods 7: 335–336. doi: 10.1038/nmeth.f.303 20383131

33. Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R(2011)UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27:2194–2200. doi: 10.1093/bioinformatics/btr381 21700674

34. Edgar RC(2010)Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26:2460–2461. doi: 10.1093/bioinformatics/btq461 20709691

35. Wang Q, Garrity GM, Tiedje J.M, Cole JR(2007)Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy. Applied and environmental microbiology 73: 5261–5267. doi: 10.1128/AEM.00062-07 17586664

36. Sun RB, Zhang XX, Guo XS, Wang DZ, Chu HY(2015)Bacterial diversity in soils subjected to long-term chemical fertilization can be more stably maintained with the addition of livestock manure than wheat straw. Soil Biology & Biochemistry 88:9–18.

37. Meng D, Yu X, Ma L, Hu J, Liang Y, et al.(2017)Transcriptomic Response of Chinese Yew (Taxus chinensis) to Cold Stress. Frontiers in plant science 8:468–468. doi: 10.3389/fpls.2017.00468 28503178


Článek vyšel v časopise

PLOS One


2019 Číslo 12