High-throughput sequencing analysis of microbial community diversity in response to indica and japonica bar-transgenic rice paddy soils

English version

Autoři: Meidan He ^aff001; Jiachao Zhang ^aff002; Linbo Shen ^aff003; Lixin Xu ^aff001; Wenjie Luo ^aff001; Dong Li ^aff001; Nanxin Zhai ^aff001; Jianfa Zhao ^aff001; Yan Long ^aff004; Xinwu Pei ^aff004; Qianhua Yuan ^aff001
Působiště autorů: Hainan Key Laboratory for Sustainable Utilization of Tropical Bio-resources, Institute of Tropical Agriculture and Forestry, Hainan University, Haikou, China ^aff001; College of Food Science and Technology, Hainan University, Haikou, China ^aff002; Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agriculture, Haikou, China ^aff003; Ministry of Agriculture Key Laboratory on Safety Assessment (Molecular) of Agriculture Genetically Modified Organisms, Biotechnology Research Institute, Chinese Academy of Agriculture Sciences, Beijing, China ^aff004
Vyšlo v časopise: PLoS ONE 14(9)
Kategorie: Research Article
doi: https://doi.org/10.1371/journal.pone.0222191

Souhrn

Potential environmental risks of genetically modified (GM) crops have raised concerns. To better understand the effect of transgenic rice on the bacterial community in paddy soil, a field experiment was carried out using pairs of rice varieties from two subspecies (indica and japonica) containing bar transgene with herbicide resistance and their parental conventional rice. The 16S rRNA gene of soil genomic DNA from different soil layers at the maturity stage was sequenced using high-throughput sequencing on the Illumina MiSeq platform to explore the microbial community diversity among different rice soils. There were no significant differences in diversity indices between transgenic japonica rice and its sister conventional rice (japonica pair) among different soil layers, but, significant differences was observed between transgenic indica rice and its conventional rice (indica pair) in the topsoil layer around concentrated rice roots according to the ace diversity index. Though the japonica rice soil and indica rice soil were shared several key genera, including Rivibacter, Anaeromyxobacter, Roseomonas, Geobacter, Thiobacillus, Clostridium, and Desulfobulbus, the primary bacterial genera in indica rice soil were different from those in japonica rice. Synechococcus and Dechloromonas were present in japonica rice samples, while Chloronema, Flexibacter, and Blastocatella were observed in indica rice soil. Moreover, the abundance of genera between GM and non-GM varieties in japonica rice was significantly different from indica rice, and several bacterial communities influenced these differences. Anaerovorax was more abundant in transgenic japonica rice soil than conventional rice soil, while it was deficient in transgenic indica rice soil compared to conventional rice soil, and opposite responses to Deferrisoma were in that of indica rice. Thus, we concluded that transgenic indica and japonica rice had different effects on soil bacteria compared with their corresponding sister conventional rice. However, these composition and abundance difference only occurred for a few genera but had no effect on the primary genera and soil characteristics were mainly contributed to these differences. Thus, differences in bacterial community structure can be ignored when evaluating the impacts of transgenic rice in the complex soil microenvironment.

Klíčová slova:

Biology and life sciences – Organisms – Eukaryota – Plants – Grasses – Rice – Genetically modified plants – Genetically modified crops – Bacteria – Bioengineering – Biotechnology – Genetic engineering – Genetically modified organisms – Plant biotechnology – Plant science – Plant ecology – Plant-environment interactions – Rhizosphere – Agriculture – Agricultural soil science – Ecology – Community ecology – Community structure – Research and analysis methods – Animal studies – Experimental organism systems – Plant and algal models – Engineering and technology – Ecology and environmental sciences – Soil science – Soil ecology

Zdroje

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High-throughput sequencing analysis of microbial community diversity in response to indica and japonica bar-transgenic rice paddy soils

Souhrn

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