The complete mitochondrial genome of Calyptogena marissinica (Heterodonta: Veneroida: Vesicomyidae): Insight into the deep-sea adaptive evolution of vesicomyids


Autoři: Mei Yang aff001;  Lin Gong aff001;  Jixing Sui aff001;  Xinzheng Li aff001
Působiště autorů: Department of Marine Organism Taxonomy and Phylogeny, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China aff001;  Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China aff002;  Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China aff003;  University of Chinese Academy of Sciences, Beijing, China aff004
Vyšlo v časopise: PLoS ONE 14(9)
Kategorie: Research Article
doi: https://doi.org/10.1371/journal.pone.0217952

Souhrn

The deep-sea chemosynthetic environment is one of the most extreme environments on the Earth, with low oxygen, high hydrostatic pressure and high levels of toxic substances. Species of the family Vesicomyidae are among the dominant chemosymbiotic bivalves found in this harsh habitat. Mitochondria play a vital role in oxygen usage and energy metabolism; thus, they may be under selection during the adaptive evolution of deep-sea vesicomyids. In this study, the mitochondrial genome (mitogenome) of the vesicomyid bivalve Calyptogena marissinica was sequenced with Illumina sequencing. The mitogenome of C. marissinica is 17,374 bp in length and contains 13 protein-coding genes, 2 ribosomal RNA genes (rrnS and rrnL) and 22 transfer RNA genes. All of these genes are encoded on the heavy strand. Some special elements, such as tandem repeat sequences, “G(A)nT” motifs and AT-rich sequences, were observed in the control region of the C. marissinica mitogenome, which is involved in the regulation of replication and transcription of the mitogenome and may be helpful in adjusting the mitochondrial energy metabolism of organisms to adapt to the deep-sea chemosynthetic environment. The gene arrangement of protein-coding genes was identical to that of other sequenced vesicomyids. Phylogenetic analyses clustered C. marissinica with previously reported vesicomyid bivalves with high support values. Positive selection analysis revealed evidence of adaptive change in the mitogenome of Vesicomyidae. Ten potentially important adaptive residues were identified, which were located in cox1, cox3, cob, nad2, nad4 and nad5. Overall, this study sheds light on the mitogenomic adaptation of vesicomyid bivalves that inhabit the deep-sea chemosynthetic environment.

Klíčová slova:

Biology and life sciences – Biochemistry – Bioenergetics – Energy-producing organelles – Mitochondria – Nucleic acids – RNA – Non-coding RNA – Transfer RNA – Ribosomal RNA – Ribosomes – Cell biology – Cellular structures and organelles – Organisms – Eukaryota – Animals – Invertebrates – Molluscs – Bivalves – Evolutionary biology – Evolutionary systematics – Phylogenetics – Phylogenetic analysis – Evolutionary processes – Evolutionary adaptation – Taxonomy – Research and analysis methods – Database and informatics methods – Bioinformatics – Sequence analysis – Sequence motif analysis – DNA sequence analysis – Computer and information sciences – Data management


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PLOS One


2019 Číslo 9
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