-
Články
Top novinky
Reklama- Vzdělávání
- Časopisy
Top články
Nové číslo
- Témata
Top novinky
Reklama- Kongresy
- Videa
- Podcasty
Nové podcasty
Reklama- Kariéra
Doporučené pozice
Reklama- Praxe
Top novinky
ReklamaA novel system of bacterial cell division arrest implicated in horizontal transmission of an integrative and conjugative element
Autoři: Sotaro Takano aff001; Kohei Fukuda aff002; Akiko Koto aff001; Ryo Miyazaki aff001
Působiště autorů: Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan aff001; Department of Bioscience, Graduate School of Science and Technology, Shizuoka University, Hamamatsu, Japan aff002; Computational Bio Big Data Open Innovation Laboratory (CBBD-OIL), AIST, Tsukuba, Japan aff003; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan aff004
Vyšlo v časopise: A novel system of bacterial cell division arrest implicated in horizontal transmission of an integrative and conjugative element. PLoS Genet 15(10): e32767. doi:10.1371/journal.pgen.1008445
Kategorie: Research Article
doi: https://doi.org/10.1371/journal.pgen.1008445Souhrn
Integrative and conjugative elements (ICEs) are widespread mobile DNA elements in the prokaryotic world. ICEs are usually retained within the bacterial chromosome, but can be excised and transferred from a donor to a new recipient cell, even of another species. Horizontal transmission of ICEclc, a prevalent ICE in proteobacteria, only occurs from developed specialized transfer competent (tc) cells in the donor population. tc cells become entirely dedicated to the ICE transmission at the cost of cell proliferation. The cell growth impairment is mediated by two ICEclc located genes, parA and shi, but the mechanistic and dynamic details of this process are unknown. To better understand the function of ParA and Shi, we followed their intracellular behavior from fluorescent protein fusions, and studied host cell division at single-cell level. Superresolution imaging revealed that ParA-mCherry colocalized with the host nucleoid while Shi-GFP was enriched at the membrane during the growth impairment. Despite being enriched at different cellular locations, the two proteins showed in vivo interactions, and mutations in the Walker A motif of ParA dislocalized both ParA and Shi. In addition, ParA mutations in the ATPase motif abolished the growth arrest on the host cell. Time-lapse microscopy revealed that ParA and Shi initially delay cell division, suggesting an extension of the S phase of cells, but eventually completely inhibit cell elongation. The parA-shi locus is highly conserved in other ICEclc-related elements, and expressing ParA-Shi from ICEclc in other proteobacterial species caused similar growth arrest, suggesting that the system functions similarly across hosts. The results of our study provide mechanistic insight into the novel and unique system on ICEs and help to understand such epistatic interaction between ICE genes and host physiology that entails efficient horizontal gene transfer.
Klíčová slova:
Adenosine triphosphatase – Cell cycle and cell division – Cell growth – DNA-binding proteins – Fluorescence imaging – Phylogenetic analysis – Pseudomonas putida – Horizontal gene transfer
Zdroje
1. Delavat F, Miyazaki R, Carraro N, Pradervand N, van der Meer JR. The hidden life of integrative and conjugative elements. FEMS Microbiol Rev. 2017. doi: 10.1093/femsre/fux008 28369623
2. Johnson CM, Grossman AD. Integrative and Conjugative Elements (ICEs): What They Do and How They Work. Annu Rev Genet. 2015;49 : 577–601. doi: 10.1146/annurev-genet-112414-055018 26473380
3. Wozniak RA, Waldor MK. Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow. Nat Rev Microbiol. 2010;8(8):552–563. doi: 10.1038/nrmicro2382 20601965
4. Bellanger X, Payot S, Leblond-Bourget N, Guedon G. Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev. 2014;38(4):720–760. doi: 10.1111/1574-6976.12058 24372381
5. Guglielmini J, de la Cruz F, Rocha EP. Evolution of conjugation and type IV secretion systems. Mol Biol Evol. 2013;30(2):315–331. doi: 10.1093/molbev/mss221 22977114
6. Guglielmini J, Quintais L, Garcillan-Barcia MP, de la Cruz F, Rocha EP. The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation. PLoS Genet. 2011;7(8):e1002222. doi: 10.1371/journal.pgen.1002222 21876676
7. Roos TE, van Passel MW. A quantitative account of genomic island acquisitions in prokaryotes. BMC genomics. 2011;12 : 427. doi: 10.1186/1471-2164-12-427 21864345
8. Gaillard M, Pernet N, Vogne C, Hagenbuchle O, van der Meer JR. Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1. Proc Natl Acad Sci U S A. 2008;105(19):7058–7063. doi: 10.1073/pnas.0801269105 18448680
9. Miyazaki R, Yano H, Sentchilo V, van der Meer JR. Physiological and transcriptome changes induced by Pseudomonas putida acquisition of an integrative and conjugative element. Scientific reports. 2018;8(1):5550. doi: 10.1038/s41598-018-23858-6 29615803
10. Auchtung JM, Lee CA, Garrison KL, Grossman AD. Identification and characterization of the immunity repressor (ImmR) that controls the mobile genetic element ICEBs1 of Bacillus subtilis. Mol Microbiol. 2007;64(6):1515–1528. doi: 10.1111/j.1365-2958.2007.05748.x 17511812
11. Pradervand N, Sulser S, Delavat F, Miyazaki R, Lamas I, van der Meer JR. An operon of three transcriptional regulators controls horizontal gene transfer of the integrative and conjugative element ICEclc in Pseudomonas knackmussii B13. PLoS Genet. 2014;10(6):e1004441. doi: 10.1371/journal.pgen.1004441 24945944
12. Miyazaki R, Bertelli C, Benaglio P, Canton J, De Coi N, Gharib WH, et al. Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds. Environ Microbiol. 2015;17(1):91–104. doi: 10.1111/1462-2920.12498 24803113
13. Obi CC, Vayla S, de Gannes V, Berres ME, Walker J, Pavelec D, et al. The Integrative Conjugative Element clc (ICEclc) of Pseudomonas aeruginosa JB2. Front Microbiol. 2018;9 : 1532. doi: 10.3389/fmicb.2018.01532 30050515
14. Reinhard F, Miyazaki R, Pradervand N, van der Meer JR. Cell differentiation to "mating bodies" induced by an integrating and conjugative element in free-living bacteria. Curr Biol. 2013;23(3):255–259. doi: 10.1016/j.cub.2012.12.025 23333318
15. Minoia M, Gaillard M, Reinhard F, Stojanov M, Sentchilo V, van der Meer JR. Stochasticity and bistability in horizontal transfer control of a genomic island in Pseudomonas. Proc Natl Acad Sci U S A. 2008;105(52):20792–20797. doi: 10.1073/pnas.0806164106 19098098
16. Miyazaki R, Minoia M, Pradervand N, Sulser S, Reinhard F, van der Meer JR. Cellular variability of RpoS expression underlies subpopulation activation of an integrative and conjugative element. PLoS Genet. 2012;8(7):e1002818. doi: 10.1371/journal.pgen.1002818 22807690
17. Delavat F, Mitri S, Pelet S, van der Meer JR. Highly variable individual donor cell fates characterize robust horizontal gene transfer of an integrative and conjugative element. Proc Natl Acad Sci U S A. 2016;113(24):E3375–3383. doi: 10.1073/pnas.1604479113 27247406
18. Reinhard F, van der Meer JR. Life history analysis of integrative and conjugative element activation in growing microcolonies of Pseudomonas. J Bacteriol. 2014;196(7):1425–1434. doi: 10.1128/JB.01333-13 24464463
19. Vecchiarelli AG, Han YW, Tan X, Mizuuchi M, Ghirlando R, Biertumpfel C, et al. ATP control of dynamic P1 ParA-DNA interactions: a key role for the nucleoid in plasmid partition. Mol Microbiol. 2010;78(1):78–91. doi: 10.1111/j.1365-2958.2010.07314.x 20659294
20. Vecchiarelli AG, Havey JC, Ing LL, Wong EO, Waples WG, Funnell BE. Dissection of the ATPase active site of P1 ParA reveals multiple active forms essential for plasmid partition. J Biol Chem. 2013;288(24):17823–17831. doi: 10.1074/jbc.M113.469981 23632076
21. Yamaguchi Y, Inouye M. Regulation of growth and death in Escherichia coli by toxin-antitoxin systems. Nat Rev Microbiol. 2011;9(11):779–790. doi: 10.1038/nrmicro2651 21927020
22. Baltrus DA. Exploring the costs of horizontal gene transfer. Trends in ecology & evolution. 2013;28(8):489–495. doi: 10.1016/j.tree.2013.04.002 23706556
23. Banos RC, Vivero A, Aznar S, Garcia J, Pons M, Madrid C, et al. Differential regulation of horizontally acquired and core genome genes by the bacterial modulator H-NS. PLoS Genet. 2009;5(6):e1000513. doi: 10.1371/journal.pgen.1000513 19521501
24. Doyle M, Fookes M, Ivens A, Mangan MW, Wain J, Dorman CJ. An H-NS-like stealth protein aids horizontal DNA transmission in bacteria. Science. 2007;315(5809):251–252. doi: 10.1126/science.1137550 17218529
25. Mruk I, Kobayashi I. To be or not to be: regulation of restriction-modification systems and other toxin-antitoxin systems. Nucleic Acids Res. 2014;42(1):70–86. doi: 10.1093/nar/gkt711 23945938
26. Chen Y, Golding I, Sawai S, Guo L, Cox EC. Population fitness and the regulation of Escherichia coli genes by bacterial viruses. PLoS Biol. 2005;3(7):e229. doi: 10.1371/journal.pbio.0030229 15984911
27. Feiner R, Argov T, Rabinovich L, Sigal N, Borovok I, Herskovits AA. A new perspective on lysogeny: prophages as active regulatory switches of bacteria. Nat Rev Microbiol. 2015;13(10):641–650. doi: 10.1038/nrmicro3527 26373372
28. Paul JH. Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas? The ISME journal. 2008;2(6):579–589. doi: 10.1038/ismej.2008.35 18521076
29. Trempy JE, Kirby JE, Gottesman S. Alp Suppression of Lon—Dependence on the Slpa Gene. Journal of Bacteriology. 1994;176(7):2061–2067. doi: 10.1128/jb.176.7.2061-2067.1994 7511582
30. Kirby JE, Trempy JE, Gottesman S. Excision of a P4-Like Cryptic Prophage Leads to Alp Protease Expression in Escherichia-Coli. Journal of Bacteriology. 1994;176(7):2068–2081. doi: 10.1128/jb.176.7.2068-2081.1994 7511583
31. Ravatn R, Studer S, Zehnder AJ, van der Meer JR. Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. Strain B13. J Bacteriol. 1998;180(21):5505–5514. 9791097
32. Baxter JC, Funnell BE. Plasmid Partition Mechanisms. Microbiol Spectr. 2014;2(6). doi: 10.1128/microbiolspec.PLAS-0023-2014 26104442
33. Brooks AC, Hwang LC. Reconstitutions of plasmid partition systems and their mechanisms. Plasmid. 2017;91 : 37–41. doi: 10.1016/j.plasmid.2017.03.004 28322855
34. Le Gall A, Cattoni DI, Guilhas B, Mathieu-Demaziere C, Oudjedi L, Fiche JB, et al. Bacterial partition complexes segregate within the volume of the nucleoid. Nature communications. 2016;7 : 12107. doi: 10.1038/ncomms12107 27377966
35. Vecchiarelli AG, Hwang LC, Mizuuchi K. Cell-free study of F plasmid partition provides evidence for cargo transport by a diffusion-ratchet mechanism. Proc Natl Acad Sci U S A. 2013;110(15):E1390–1397. doi: 10.1073/pnas.1302745110 23479605
36. Zhang H, Schumacher MA. Structures of partition protein ParA with nonspecific DNA and ParB effector reveal molecular insights into principles governing Walker-box DNA segregation. Genes Dev. 2017;31(5):481–492. doi: 10.1101/gad.296319.117 28373206
37. Fung E, Bouet JY, Funnell BE. Probing the ATP-binding site of P1 ParA: partition and repression have different requirements for ATP binding and hydrolysis. EMBO J. 2001;20(17):4901–4911. doi: 10.1093/emboj/20.17.4901 11532954
38. Jorgensen MG, Pandey DP, Jaskolska M, Gerdes K. HicA of Escherichia coli defines a novel family of translation-independent mRNA interferases in bacteria and archaea. J Bacteriol. 2009;191(4):1191–1199. doi: 10.1128/JB.01013-08 19060138
39. Murray H, Errington J. Dynamic control of the DNA replication initiation protein DnaA by Soj/ParA. Cell. 2008;135(1):74–84. doi: 10.1016/j.cell.2008.07.044 18854156
40. Scholefield G, Whiting R, Errington J, Murray H. Spo0J regulates the oligomeric state of Soj to trigger its switch from an activator to an inhibitor of DNA replication initiation. Mol Microbiol. 2011;79(4):1089–1100. doi: 10.1111/j.1365-2958.2010.07507.x 21235642
41. Sambrook J, Russell DW. Molecular Cloning: a laboratory manual. Cold Spring Harbor, N. Y.: Cold Spring Harbor Laboratory Press; 2001.
42. Bachmann BJ. Pedigrees of some mutant strains of Escherichia coli K-12. Bacteriol Rev. 1972;36(4):525–557. 4568763
43. Pohlmann A, Fricke WF, Reinecke F, Kusian B, Liesegang H, Cramm R, et al. Genome sequence of the bioplastic-producing "Knallgas" bacterium Ralstonia eutropha H16. Nat Biotechnol. 2006;24(10):1257–1262. doi: 10.1038/nbt1244 16964242
44. McClure NC, Weightman AJ, Fry JC. Survival of Pseudomonas putida UWC1 containing cloned catabolic genes in a model activated-sludge unit. Appl Environ Microbiol. 1989;55(10):2627–2634. 2604401
45. Gerhardt P, Murray RGE, Costilow RN, Nester EW, Wood WA, Kreig NR, et al. Manual of Methods for General Bacteriology. Washington, DC: American Society for Microbiology; 1981.
46. Miyazaki R, van der Meer JR. A dual functional origin of transfer in the ICEclc genomic island of Pseudomonas knackmussii B13. Mol Microbiol. 2011;79(3):743–758. doi: 10.1111/j.1365-2958.2010.07484.x 21255116
47. Jaspers MC, Meier C, Zehnder AJ, Harms H, van der Meer JR. Measuring mass transfer processes of octane with the help of an alkSalkB::gfp-tagged Escherichia coli. Environ Microbiol. 2001;3(8):512–524. 11578312
48. Choi KH, Gaynor JB, White KG, Lopez C, Bosio CM, Karkhoff-Schweizer RR, et al. A Tn7-based broad-range bacterial cloning and expression system. Nat Methods. 2005;2(6):443–448. doi: 10.1038/nmeth765 15908923
49. Sentchilo V, Czechowska K, Pradervand N, Minoia M, Miyazaki R, van der Meer JR. Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp. strain B13. Mol Microbiol. 2009;72(5):1293–1306. doi: 10.1111/j.1365-2958.2009.06726.x 19432799
50. Young JW, Locke JC, Altinok A, Rosenfeld N, Bacarian T, Swain PS, et al. Measuring single-cell gene expression dynamics in bacteria using fluorescence time-lapse microscopy. Nat Protoc. 2011;7(1):80–88. doi: 10.1038/nprot.2011.432 22179594
51. Kumar S, Stecher G, Tamura K. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. Mol Biol Evol. 2016;33(7):1870–1874. doi: 10.1093/molbev/msw054 27004904
52. Reinhard F, van der Meer JR. Improved statistical analysis of low abundance phenomena in bimodal bacterial populations. PLoS One. 2013;8(10):e78288. doi: 10.1371/journal.pone.0078288 24205184
Štítky
Genetika Reprodukční medicína
Článek Viral quasispeciesČlánek Differential Requirements for the RAD51 Paralogs in Genome Repair and Maintenance in Human CellsČlánek Genetic mapping of fitness determinants across the malaria parasite Plasmodium falciparum life cycle
Článek vyšel v časopisePLOS Genetics
Nejčtenější tento týden
2019 Číslo 10- IVF a rakovina prsu – zvyšují hormony riziko vzniku rakoviny?
- Akutní intermitentní porfyrie
- Souvislost haplotypu M2 genu pro annexin A5 s opakovanými reprodukčními ztrátami
- Transthyretinová amyloidóza z pohledu neurologa a kardiologa aneb jak se vyhnout „misdiagnostice“?
- Klinický exom v prenatální diagnostice – kazuistika
-
Všechny články tohoto čísla
- HRPK-1, a conserved KH-domain protein, modulates microRNA activity during Caenorhabditis elegans development
- Dysregulation of STAT3 signaling is associated with endplate-oriented herniations of the intervertebral disc in Adgrg6 mutant mice
- Local adaptation drives the diversification of effectors in the fungal wheat pathogen Parastagonospora nodorum in the United States
- Biofilm-associated toxin and extracellular protease cooperatively suppress competitors in Bacillus subtilis biofilms
- Mutations of the Bacillus subtilis YidC1 (SpoIIIJ) insertase alleviate stress associated with σM-dependent membrane protein overproduction
- Viral quasispecies
- A functional regulatory variant of MYH3 influences muscle fiber-type composition and intramuscular fat content in pigs
- INX-18 and INX-19 play distinct roles in electrical synapses that modulate aversive behavior in Caenorhabditis elegans
- MR-pheWAS with stratification and interaction: Searching for the causal effects of smoking heaviness identified an effect on facial aging
- Tnni3k alleles influence ventricular mononuclear diploid cardiomyocyte frequency
- Differential Requirements for the RAD51 Paralogs in Genome Repair and Maintenance in Human Cells
- Ataxin2 functions via CrebA to mediate Huntingtin toxicity in circadian clock neurons
- Genetic factors define CPO and CLO subtypes of nonsyndromicorofacial cleft
- The quorum sensing transcription factor AphA directly regulates natural competence in Vibrio cholerae
- Mck1 kinase is a new player in the DNA damage checkpoint pathway
- A small set of conserved genes, including sp5 and Hox, are activated by Wnt signaling in the posterior of planarians and acoels
- Causal relationships between obesity and the leading causes of death in women and men
- Macrophages fine tune satellite cell fate in dystrophic skeletal muscle of mdx mice
- Optimizing clinical exome design and parallel gene-testing for recessive genetic conditions in preconception carrier screening: Translational research genomic data from 14,125 exomes
- Manipulating mtDNA in vivo reprograms metabolism via novel response mechanisms
- TSEN54 missense variant in Standard Schnauzers with leukodystrophy
- Centromeric SMC1 promotes centromer clustering and stabilizes meiotic homolog pairing
- A RAPGEF6 variant constitutes a major risk factor for laryngeal paralysis in dogs
- GPCR-mediated glucose sensing system regulates light-dependent fungal development and mycotoxin production
- Kinetochore-associated Stu2 promotes chromosome biorientation in vivo
- Metabolic effects of skeletal muscle-specific deletion of beta-arrestin-1 and -2 in mice
- NusG prevents transcriptional invasion of H-NS-silenced genes
- The effects of manipulating levels of replication initiation factors on origin firing efficiency in yeast
- Bayesian multivariate reanalysis of large genetic studies identifies many new associations
- Bacillus subtilis PgcA moonlights as a phosphoglucosamine mutase in support of peptidoglycan synthesis
- Protease-associated import systems are widespread in Gram-negative bacteria
- Expression of Concern: Exome sequencing in multiple sclerosis families identifies 12 candidate genes and nominates biological pathways for the genesis of disease
- Evaluating the strength of genetic results: Risks and responsibilities
- Spatiotemporal cytoskeleton organizations determine morphogenesis of multicellular trichomes in tomato
- Loss of thymidine kinase 1 inhibits lung cancer growth and metastatic attributes by reducing GDF15 expression
- Histone deposition promotes recombination-dependent replication at arrested forks
- Synergistic action of the transcription factors Krüppel homolog 1 and Hairy in juvenile hormone/Methoprene-tolerant-mediated gene-repression in the mosquito Aedes aegypti
- Low affinity binding sites in an activating CRM mediate negative autoregulation of the Drosophila Hox gene Ultrabithorax
- A novel system of bacterial cell division arrest implicated in horizontal transmission of an integrative and conjugative element
- PilT and PilU are homohexameric ATPases that coordinate to retract type IVa pili
- The comprehensive role of E-cadherin in maintaining prostatic epithelial integrity during oncogenic transformation and tumor progression
- Genetic mapping of fitness determinants across the malaria parasite Plasmodium falciparum life cycle
- A missense mutation in SNRPE linked to non-syndromal microcephaly interferes with U snRNP assembly and pre-mRNA splicing
- CRISPR editing of sftb-1/SF3B1 in Caenorhabditis elegans allows the identification of synthetic interactions with cancer-related mutations and the chemical inhibition of splicing
- Nitrate-responsive OBP4-XTH9 regulatory module controls lateral root development in Arabidopsis thaliana
- Paralog buffering contributes to the variable essentiality of genes in cancer cell lines
- Splice variants of DOMINO control Drosophila circadian behavior and pacemaker neuron maintenance
- Duplicate divergence of two bacterial small heat shock proteins reduces the demand for Hsp70 in refolding of substrates
- PLOS Genetics
- Archiv čísel
- Aktuální číslo
- Informace o časopisu
Nejčtenější v tomto čísle- Spatiotemporal cytoskeleton organizations determine morphogenesis of multicellular trichomes in tomato
- Loss of thymidine kinase 1 inhibits lung cancer growth and metastatic attributes by reducing GDF15 expression
- Synergistic action of the transcription factors Krüppel homolog 1 and Hairy in juvenile hormone/Methoprene-tolerant-mediated gene-repression in the mosquito Aedes aegypti
- TSEN54 missense variant in Standard Schnauzers with leukodystrophy
Kurzy
Zvyšte si kvalifikaci online z pohodlí domova
Autoři: prof. MUDr. Vladimír Palička, CSc., Dr.h.c., doc. MUDr. Václav Vyskočil, Ph.D., MUDr. Petr Kasalický, CSc., MUDr. Jan Rosa, Ing. Pavel Havlík, Ing. Jan Adam, Hana Hejnová, DiS., Jana Křenková
Autoři: MUDr. Irena Krčmová, CSc.
Autoři: MDDr. Eleonóra Ivančová, PhD., MHA
Autoři: prof. MUDr. Eva Kubala Havrdová, DrSc.
Všechny kurzyPřihlášení#ADS_BOTTOM_SCRIPTS#Zapomenuté hesloZadejte e-mailovou adresu, se kterou jste vytvářel(a) účet, budou Vám na ni zaslány informace k nastavení nového hesla.
- Vzdělávání