1. CushionMT, StringerJR (2010) Stealth and opportunism: alternative lifestyles of species in the fungal genus Pneumocystis. Annu Rev Microbiol 64: 431–452.
2. BrownGD, DenningDW, GowNAR, LevitzSM, NeteaMG, et al. (2012) Hidden killers: Human fungal infections. Sci Transl Med 4: 165rv13.
3. CisséOH, PagniM, HauserPM (2012) De novo assembly of the Pneumocystis jirovecii genome from a single bronchoalveolar lavage fluid specimen from a patient. MBio 4: e00428–00412.
4. SesterhennTM, SlavenBE, KeelySP, SmulianAG, LangBF, et al. (2010) Sequence and structure of the linear mitochondrial genome of Pneumocystis carinii. Mol Genet Genomics 283: 63–72.
5. MaL, HuangDW, CuomoCA, SykesS, FantoniG, et al. (2013) Sequencing and characterization of the complete mitochondrial genomes of three Pneumocystis species provide new insights into divergence between human and rodent Pneumocystis. FASEB J 27: 1962–1972.
6. HauserPM, BurdetFX, CisséOH, KellerL, TafféP, et al. (2010) Comparative genomics suggests that the fungal pathogen Pneumocystis is an obligate parasite scavenging amino acids from its host's lungs. PLoS ONE 5: e15152.
7. CisséOH, AlmeidaJM, FonsecaA, KumarAA, SalojärviJ, et al. (2013) Genome sequencing of the plant pathogen Taphrina deformans, the causal agent of peach leaf curl. MBio 4: e00055–00013.
8. CushionMT, SmulianAG, SlavenBE, SesterhennT, ArnoldJ, et al. (2007) Transcriptome of Pneumocystis carinii during fulminate infection: carbohydrate metabolism and the concept of a compatible parasite. PLoS ONE 2: e423.
9. CushionMT (2004) Comparative genomics of Pneumocystis carinii with other protists: implications for life style. J Eukaryot Microbiol 51: 30–37.
10. CisséOH, PagniM, HauserPM (2014) Comparative genomics suggests that the human pathogenic fungus Pneumocystis jirovecii acquired obligate biotrophy through gene loss. Genome Biol Evol 6 In Press.
11. AnderssonJO, AnderssonSG (1999) Insights into the evolutionary process of genome degradation. Curr Opin Genet Dev 9: 664–671.
12. SakharkarKR, DharPK, ChowVT (2004) Genome reduction in prokaryotic obligatory intracellular parasites of humans: a comparative analysis. Int J Syst Evol Microbiol 54: 1937–1941.
13. JoffrionTM, CushionMT (2010) Sterol biosynthesis and sterol uptake in the fungal pathogen Pneumocystis carinii. FEMS Microbiol Lett 311: 1–9.
14. MerhejV, Royer-CarenziM, PontarottiP, RaoultD (2009) Massive comparative genomic analysis reveals convergent evolution of specialized bacteria. Biol Direct 4: 13.
15. KemenE, JonesJD (2012) Obligate biotroph parasitism: can we link genomes to lifestyles? Trends Plant Sci 17: 448–457.
16. SpanuPD (2012) The genomics of obligate (and nonobligate) biotrophs. Annu Rev Phytopathol 50: 91–109.
17. O'ConnellRJ, PanstrugaR (2006) Tête à tête inside a plant cell: establishing compatibility between plants and biotrophic fungi and oomycetes. New Phytol 171: 699–718.
18. PayneSH, LoomisWF (2006) Retention and loss of amino acid biosynthetic pathways based on analysis of whole-genome sequences. Eukaryot Cell 5: 272–276.
19. CushionMT, LinkeMJ, AshbaughA, et al. (2010) Echinocandin treatment of Pneumocystis pneumonia in rodent models depletes cysts leaving trophic burdens that cannot transmit the infection. PLoS ONE 5: e8524.
20. MorrisA, NorrisKA (2012) Colonization by Pneumocystis jirovecii and its role in disease. Clin Microbiol Rev 25: 297–317.