PLOS Genetics - Číslo 8/2020

Viewpoints

1008929
How many familial relationship testing results could be wrong?

Jianye Ge, Bruce Budowle


Review

1008930
Long noncoding RNA functionality in imprinted domain regulation

William A. MacDonald, Mellissa R. W. Mann

1008987
The roles of replication-transcription conflict in mutagenesis and evolution of genome organization

Jeremy W. Schroeder, T. Sabari Sankar, Jue D. Wang, Lyle A. Simmons


Editorial

1008970
Genomic imprinting: An epigenetic regulatory system

Marisa S. Bartolomei, Rebecca J. Oakey, Anton Wutz


Opinion Piece

1008889
Costly Genes

Maria Karayiorgou


Research Article

1008348
Demographic history shaped geographical patterns of deleterious mutation load in a broadly distributed Pacific Salmon

Quentin Rougemont, Jean-Sébastien Moore, Thibault Leroy, Eric Normandeau, Eric B. Rondeau, Ruth E. Withler, Donald M. Van Doornik, Penelope A. Crane, Kerry A. Naish, John Carlos Garza, Terry D. Beacham, Ben F. Koop, Louis Bernatchez

1008505
Immediate activation of chemosensory neuron gene expression by bacterial metabolites is selectively induced by distinct cyclic GMP-dependent pathways in Caenorhabditis elegans

Jaeseok Park, Joshua D. Meisel, Dennis H. Kim

1008569
Phospho-regulation of the Shugoshin - Condensin interaction at the centromere in budding yeast

Galal Yahya Metwaly, Yehui Wu, Karolina Peplowska, Jennifer Röhrl, Young-Min Soh, Frank Bürmann, Stephan Gruber, Zuzana Storchova, Galal Yahya

1008644
Gα/GSA-1 works upstream of PKA/KIN-1 to regulate calcium signaling and contractility in the Caenorhabditis elegans spermatheca

Perla G. Castaneda, Alyssa D. Cecchetelli, Hannah N. Pettit, Erin J. Cram

1008691
Mutation of CFAP57, a protein required for the asymmetric targeting of a subset of inner dynein arms in Chlamydomonas, causes primary ciliary dyskinesia

Ximena M. Bustamante-Marin, Amjad Horani, Mihaela Stoyanova, Wu-Lin Charng, Mathieu Bottier, Patrick R. Sears, Wei-Ning Yin, Leigh Anne Daniels, Hailey Bowen, Donald F. Conrad, Michael R. Knowles, Lawrence E. Ostrowski, Maimoona A. Zariwala, Susan K. Dutcher

1008745
Uptake of exogenous serine is important to maintain sphingolipid homeostasis in Saccharomyces cerevisiae

Bianca M. Esch, Sergej Limar, André Bogdanowski, Christos Gournas, Tushar More, Celine Sundag, Stefan Walter, Jürgen J. Heinisch, Christer S. Ejsing, Bruno André, Florian Fröhlich

1008752
Transcriptional regulators of the Golli/myelin basic protein locus integrate additive and stealth activities

Hooman Bagheri, Hana Friedman, Katherine A. Siminovitch, Alan C. Peterson

1008783
Conditional antagonism in co-cultures of Pseudomonas aeruginosa and Candida albicans: An intersection of ethanol and phosphate signaling distilled from dual-seq transcriptomics

Georgia Doing, Katja Koeppen, Patricia Occipinti, Colleen E. Harty, Deborah A. Hogan

1008820
DAnkrd49 and Bdbt act via Casein kinase Iε to regulate planar polarity in Drosophila

Helen Strutt, David Strutt

1008893
Hypomodified tRNA in evolutionarily distant yeasts can trigger rapid tRNA decay to activate the general amino acid control response, but with different consequences

Thareendra De Zoysa, Eric M. Phizicky

1008895
Mapping gene flow between ancient hominins through demography-aware inference of the ancestral recombination graph

Melissa J. Hubisz, Amy L. Williams, Adam Siepel

1008896
Learning the properties of adaptive regions with functional data analysis

Mehreen R. Mughal, Hillary Koch, Jinguo Huang, Francesca Chiaromonte, Michael DeGiorgio

1008906
Epistatic interactions between killer immunoglobulin-like receptors and human leukocyte antigen ligands are associated with ankylosing spondylitis

Aimee L. Hanson, , Damjan Vukcevic, Stephen Leslie, Jessica Harris, Kim-Anh Lê Cao, Tony J. Kenna, Matthew A. Brown

1008915
Endogenization and excision of human herpesvirus 6 in human genomes

Xiaoxi Liu, Shunichi Kosugi, Rie Koide, Yoshiki Kawamura, Jumpei Ito, Hiroki Miura, Nana Matoba, Motomichi Matsuzaki, Masashi Fujita, Anselmo Jiro Kamada, Hidewaki Nakagawa, Gen Tamiya, Koichi Matsuda, Yoshinori Murakami, Michiaki Kubo, Amr Aswad, Kei Sato, Yukihide Momozawa, Jun Ohashi, Chikashi Terao, Tetsushi Yoshikawa, Nicholas F. Parrish, Yoichiro Kamatani

1008925
A subset of broadly responsive Type III taste cells contribute to the detection of bitter, sweet and umami stimuli

Debarghya Dutta Banik, Eric D. Benfey, Laura E. Martin, Kristen E. Kay, Gregory C. Loney, Amy R. Nelson, Zachary C. Ahart, Barrett T. Kemp, Bailey R. Kemp, Ann-Marie Torregrossa, Kathryn F. Medler

1008927
On the cross-population generalizability of gene expression prediction models

Kevin L. Keys, Angel C. Y. Mak, Marquitta J. White, Walter L. Eckalbar, Andrew W. Dahl, Joel Mefford, Anna V. Mikhaylova, María G. Contreras, Jennifer R. Elhawary, Celeste Eng, Donglei Hu, Scott Huntsman, Sam S. Oh, Sandra Salazar, Michael A. Lenoir, Jimmie C. Ye, Timothy A. Thornton, Noah Zaitlen, Esteban G. Burchard, Christopher R. Gignoux

1008935
Horizontal transmission and recombination maintain forever young bacterial symbiont genomes

Shelbi L. Russell, Evan Pepper-Tunick, Jesper Svedberg, Ashley Byrne, Jennie Ruelas Castillo, Christopher Vollmers, Roxanne A. Beinart, Russell Corbett-Detig

1008941
A point mutation decouples the lipid transfer activities of microsomal triglyceride transfer protein

Meredith H. Wilson, Sujith Rajan, Aidan Danoff, Richard J. White, Monica R. Hensley, Vanessa H. Quinlivan, Rosario Recacha, James H. Thierer, Frederick J. Tan, Elisabeth M. Busch-Nentwich, Lloyd Ruddock, M. Mahmood Hussain, Steven A. Farber

1008942
Drosophila miR-87 promotes dendrite regeneration by targeting the transcriptional repressor Tramtrack69

Yasuko Kitatani, Akane Tezuka, Eri Hasegawa, Satoyoshi Yanagi, Kazuya Togashi, Masato Tsuji, Shu Kondo, Jay Z. Parrish, Kazuo Emoto

1008947
A general framework for functionally informed set-based analysis: Application to a large-scale colorectal cancer study

Xinyuan Dong, Yu-Ru Su, Richard Barfield, Stephanie A. Bien, Qianchuan He, Tabitha A. Harrison, Jeroen R. Huyghe, Temitope O. Keku, Noralane M. Lindor, Clemens Schafmayer, Andrew T. Chan, Stephen B. Gruber, Mark A. Jenkins, Charles Kooperberg, Ulrike Peters, Li Hsu

1008953
THOC1 deficiency leads to late-onset nonsyndromic hearing loss through p53-mediated hair cell apoptosis

Luping Zhang, Yu Gao, Ru Zhang, Feifei Sun, Cheng Cheng, Fuping Qian, Xuchu Duan, Guanyun Wei, Cheng Sun, Xiuhong Pang, Penghui Chen, Renjie Chai, Tao Yang, Hao Wu, Dong Liu

1008954
Cfap97d1 is important for flagellar axoneme maintenance and male mouse fertility

Seiya Oura, Samina Kazi, Audrey Savolainen, Kaori Nozawa, Julio Castañeda, Zhifeng Yu, Haruhiko Miyata, Ryan M. Matzuk, Jan N. Hansen, Dagmar Wachten, Martin M. Matzuk, Renata Prunskaite-Hyyryläinen

1008955
Disruption of the ERLIN–TM6SF2–APOB complex destabilizes APOB and contributes to non-alcoholic fatty liver disease

Bo-Tao Li, Ming Sun, Yun-Feng Li, Ju-Qiong Wang, Zi-Mu Zhou, Bao-Liang Song, Jie Luo

1008962
Haspin kinase modulates nuclear architecture and Polycomb-dependent gene silencing

Ujué Fresán, Maria A. Rodríguez-Sánchez, Oscar Reina, Victor G. Corces, M. Lluisa Espinàs

1008963
Mushroom body subsets encode CREB2-dependent water-reward long-term memory in Drosophila

Wang-Pao Lee, Meng-Hsuan Chiang, Li-Yun Chang, Jhen-Yi Lee, Ya-Lun Tsai, Tai-Hsiang Chiu, Hsueh-Cheng Chiang, Tsai-Feng Fu, Tony Wu, Chia-Lin Wu

1008965
Replication of the Salmonella Genomic Island 1 (SGI1) triggered by helper IncC conjugative plasmids promotes incompatibility and plasmid loss

Kévin T. Huguet, Nicolas Rivard, Daniel Garneau, Jason Palanee, Vincent Burrus

1008966
Nitrogen coordinated import and export of arginine across the yeast vacuolar membrane

Melody Cools, Simon Lissoir, Elisabeth Bodo, Judith Ulloa-Calzonzin, Alexander DeLuna, Isabelle Georis, Bruno André

1008967
Paired Box 9 (PAX9), the RNA polymerase II transcription factor, regulates human ribosome biogenesis and craniofacial development

Katherine I. Farley-Barnes, Engin Deniz, Maya M. Overton, Mustafa K. Khokha, Susan J. Baserga

1008975
Leveraging a gain-of-function allele of Caenorhabditis elegans paqr-1 to elucidate membrane homeostasis by PAQR proteins

Kiran Busayavalasa, Mario Ruiz, Ranjan Devkota, Marcus Ståhlman, Rakesh Bodhicharla, Emma Svensk, Nils-Olov Hermansson, Jan Borén, Marc Pilon

1008976
Sequential activation of Notch and Grainyhead gives apoptotic competence to Abdominal-B expressing larval neuroblasts in Drosophila Central nervous system

Asif Bakshi, Rashmi Sipani, Neha Ghosh, Rohit Joshi

1008977
Systematic identification of functional SNPs interrupting 3’UTR polyadenylation signals

Eldad David Shulman, Ran Elkon

1008981
A human-specific VNTR in the TRIB3 promoter causes gene expression variation between individuals

Tiit Örd, Tarmo Puurand, Daima Örd, Tarmo Annilo, Märt Möls, Maido Remm, Tõnis Örd

1008982
Gluconeogenesis and PEPCK are critical components of healthy aging and dietary restriction life extension

Brian Onken, Natallia Kalinava, Monica Driscoll

1008984
Natural variation in a glucuronosyltransferase modulates propionate sensitivity in a C. elegans propionic acidemia model

Huimin Na, Stefan Zdraljevic, Robyn E. Tanny, Albertha J. M. Walhout, Erik C. Andersen

1008988
Distinct and sequential re-replication barriers ensure precise genome duplication

Yizhuo Zhou, Pedro N. Pozo, Seeun Oh, Haley M. Stone, Jeanette Gowen Cook

1008989
Drosophila Myc restores immune homeostasis of Imd pathway via activating miR-277 to inhibit imd/Tab2

Ruimin Li, Hongjian Zhou, Chaolong Jia, Ping Jin, Fei Ma

1008990
Polo kinase recruitment via the constitutive centromere-associated network at the kinetochore elevates centromeric RNA

Guðjón Ólafsson, Peter H. Thorpe

1008991
Cryptic genetic variation enhances primate L1 retrotransposon survival by enlarging the functional coiled coil sequence space of ORF1p

Anthony V. Furano, Charlie E. Jones, Vipul Periwal, Kathryn E. Callahan, Jean-Claude Walser, Pamela R. Cook

1008992
Quorum sensing sets the stage for the establishment and vertical transmission of Sodalis praecaptivus in tsetse flies

Miguel Medina Munoz, Noah Spencer, Shinichiro Enomoto, Colin Dale, Rita V. M. Rio

1008995
Pan-genomic open reading frames: A potential supplement of single nucleotide polymorphisms in estimation of heritability and genomic prediction

Zhengcao Li, Henner Simianer

1008996
The High Osmolarity Glycerol Mitogen-Activated Protein Kinase regulates glucose catabolite repression in filamentous fungi

Leandro José de Assis, Lilian Pereira Silva, Li Liu, Kerstin Schmitt, Oliver Valerius, Gerhard H. Braus, Laure Nicolas Annick Ries, Gustavo Henrique Goldman

1009003
Serotonergic modulation of visual neurons in Drosophila melanogaster

Maureen M. Sampson, Katherine M. Myers Gschweng, Ben J. Hardcastle, Shivan L. Bonanno, Tyler R. Sizemore, Rebecca C. Arnold, Fuying Gao, Andrew M. Dacks, Mark A. Frye, David E. Krantz

1009005
Functional information from clinically-derived drug resistant forms of the Candida glabrata Pdr1 transcription factor

Lucia Simonicova, W. Scott Moye-Rowley


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