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What is ancestry?
Autoři: Iain Mathieson aff001; Aylwyn Scally aff002
Působiště autorů: Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America aff001; Department of Genetics, University of Cambridge, Cambridge, United Kingdom aff002
Vyšlo v časopise: What is ancestry?. PLoS Genet 16(3): e32767. doi:10.1371/journal.pgen.1008624
Kategorie: Opinion Piece
doi: https://doi.org/10.1371/journal.pgen.1008624
Zdroje
1. Donnelly KP. The probability that related individuals share some section of genome identical by descent. Theoretical Population Biology. 1983;23(1):34–63. doi: 10.1016/0040-5809(83)90004-7 6857549
2. Coop G. How many genetic ancestors do I have? https://gcbias.org/2013/11/11/how-does-your-number-of-genetic-ancestors-grow-back-over-time/ Accessed 11/4/19 2013.
3. Griffiths RC, Marjoram P. An ancestral recombination graph. In: Donnelly P, Tavaré S, editors. Progress in Population Genetics and Human Evolution. Berlin: Springer-Verlag; 1997. p. 257–70.
4. Li H, Durbin R. Inference of human population history from individual whole-genome sequences. Nature. 2011;475(7357):493–6. doi: 10.1038/nature10231 21753753
5. Schiffels S, Durbin R. Inferring human population size and separation history from multiple genome sequences. Nat Genet. 2014;46(8):919–25. doi: 10.1038/ng.3015 24952747
6. Rasmussen MD, Hubisz MJ, Gronau I, Siepel A. Genome-wide inference of ancestral recombination graphs. PLoS Genet. 2014;10(5):e1004342. doi: 10.1371/journal.pgen.1004342 24831947
7. Speidel L, Forest M, Shi S, Myers SR. A method for genome-wide genealogy estimation for thousands of samples. Nat Genet. 2019;51(9):1321–9. doi: 10.1038/s41588-019-0484-x 31477933
8. Kelleher J, Wong Y, Wohns AW, Fadil C, Albers PK, McVean G. Inferring whole-genome histories in large population datasets. Nat Genet. 2019;51(9):1330–8. doi: 10.1038/s41588-019-0483-y 31477934
9. Pickrell JK, Pritchard JK. Inference of population splits and mixtures from genome-wide allele frequency data. PLoS genetics. 2012;8(11):e1002967. doi: 10.1371/journal.pgen.1002967 23166502
10. Patterson N, Moorjani P, Luo Y, Mallick S, Rohland N, Zhan Y, et al. Ancient admixture in human history. Genetics. 2012;192(3):1065–93. doi: 10.1534/genetics.112.145037 22960212
11. Alexander DH, Novembre J, Lange K. Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 2009;19(9):1655–64. doi: 10.1101/gr.094052.109 19648217
12. Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics. 2000;155(2):945–59. 10835412
13. Lawson DJ, Hellenthal G, Myers S, Falush D. Inference of population structure using dense haplotype data. PLoS Genet. 2012;8(1):e1002453. doi: 10.1371/journal.pgen.1002453 22291602
14. Li N, Stephens M. Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics. 2003;165(4):2213–33. 14704198
15. Skoglund P, Mathieson I. Ancient genomics of modern humans: The first decade. Annu Rev Genomics Hum Genet. 2018;19 : 381–404. doi: 10.1146/annurev-genom-083117-021749 29709204
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