#PAGE_PARAMS# #ADS_HEAD_SCRIPTS# #MICRODATA#

The detection of TP53 mutations in chronic lymphocytic leukemia


Authors: B. Kantorová;  J. Pavlíček;  R. Plachý;  T. Papajík;  M. Jarošová
Authors‘ workplace: Hemato-onkologická klinika FN a LF UP v Olomouci
Published in: Transfuze Hematol. dnes,16, 2010, No. 2, p. 71-77.
Category: Comprehensive Reports, Original Papers, Case Reports

Overview

Chronic lymphocytic leukemia (CLL) is the most common form of adult leukemia in the Western countries. CLL is a heterogeneous disease characterized by a number of clinical and biological prognostic markers, one of the most important being mutations of the TP53 gene. To study the TP53 gene, we retrospectively investigated 72 patients with CLL using direct sequencing and high-resolution melting curve analysis (hrMCA). We found modifications of the TP53 gene in 46 (64%) patients. We detected 59 modifications of the TP53 gene (exons 2-10) in 45 (62%) patients by direct sequencing. Among these modifications, we identified 23 mutations in 20 (28%) patients. These were substitutions (83% of the mutations) and deletions (17% of the mutations). The substitutions comprised missense (90%), nonsense (5%) and silent mutations (5%). Ninety one percent of the mutations were located in the DNA-binding domain (exons 5-8) of the TP53 gene. We detected 87% of the mutations in patients with high-risk disease. We showed a statistical relationship between mutations in the TP53 gene and chromosome 17p deletion (P < 0.000001). We also observed correlation between mutations in the TP53 gene and Binet stage of CLL (P = 0.027). We found 32 aberrant PCR products of the TP53 gene (exons 5-8) in 26 (36%) patients by hrMCA. The method is more sensitive and faster than direct sequencing. However, our experience suggests that due to problems with standardization, hrMCA is not suitable for routine detection of modifications of the gene TP53 in patients with CLL.

Key words:
gene TP53, chronic lymphocytic leukemia, direct sequencing, high-resolution melting curve analysis


Sources

1. Montserrat E. New prognostic markers in CLL. Hematology 2006: 279-284.

2. Oscier D, Fegan C, Hillmen P, et al. Guidelines on the diagnosis and management of chronic lymphocytic leukaemia. British Journal of Haematology 2004; 125: 294-317.

3. Dighiero G. Chronic lymphocytic leukemia: CLL biology and prognosis. Hematology 2005: 278-284.

4. Döhner H, Fischer K, Bentz M, et al. p53 gene deletion predicts for poor survival and non-response to therapy with purine analogs in chronic B-cell leukemias. Blood 1995; 85:1580-1589.

5. Stilgenbauer S, Döhner K, Bentz M, Lichter P, Döhner H. Molecular cytogenetic analysis of B-cell chronic lymphocytic leukemia. Annals of Hematology 1998; 76: 101-110.

6. Petitjean A, Mathe E, Kato S, et al. Impact of mutant p53 functional properties on TP53 mutation patterns and tumor phenotype: lessons from recent developments in the IARC TP53 Database. Human Mutation 2007; 28: 622-629.

7. Dicker F, Herholz H, Schnittger S, et al. The detection of TP53 mutations in chronic lymphocytic leukemia independently predicts rapid disease progression and is highly correlated with a complex aberrant karyotype. Leukemia 2009; 23: 117-124.

8. Thornton P D, Gruszka-Westwood A M, Hamoudi R A, et al. Characterisation of TP53 abnormalities in chronic lymphocytic leukaemia. The Hematology Journal 2004; 5: 47-54.

9. Wittwer C T, Reed G H, Gundry C N, Vandersteen J G, Pryor J R. High resolution genotyping by amplicon melting analysis using LCGreen. Clinical Chemistry 2003; 49: 853-860.

10. Krypuy M, Ahmed A A, Etemadmoghadam D, et al. High resolution melting for mutation scanning of TP53 exons 5-8. BioMed Central Cancer 2007; 7: 168-181.

11. Bastien R, Lewis T B, Hawkes J E, et al. High-throughput amplicon scanning of the TP53 gene in breast cancer using High-resolution fluorescent melting curve analyses and automatic mutation calling. Human Mutation 2008; 29: 757-764.

12. Garritano S, Gemignani F, Voegele C, et al. Determining the effectiveness of High Resolution Melting analysis for SNP genotyping and mutation scanning at the TP53 locus. BioMed Central Genetics 2009; 10: 5-16.

13. Kunkel LM, Smith KD, Boyer SH, et al. Analysis of human Y-chromosome-specific reiterated DNA in chromosome variants. Proceedings of the National Academy of Sciences of the United States of America 1997; 74: 1245-1249.

14. Chomczynski P, Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Analytical Biochemistry 1987; 162: 156-159.

15. Sambrook J, Russell D W. Molecular Cloning: a laboratory manual. Cold Spring Harbor Laboratory Cold Spring Harbor, New York, 2001.

16. Malcikova J, Smardova J, Pekova S, et al. Identification of somatic hypermutations in the TP53 gene in B-cell chronic lymphocytic leukemia. Molecullar Immunology 2008; 45: 1525-1529.

17. Zenz T, Kröber A, Scherer K, et al. Monoallelic TP53 inactivation is associated with poor prognosis in chronic lymphocytic leukemia: results from a detailed genetic characterization with long-term follow-up. Blood 2008; 112: 3322-3329.

18. Trbusek M, Malcikova J, Smardova J, et al. Inactivation of p53 and deletion of ATM in B-CLL patients in relation to IgVH mutation status and previous treatment. Leukemia 2006; 20: 1159-1161.

19. Pekova S, Cmejla R, Smolej L, Kozak T, Spacek M, Prucha M. Identification of a novel, transactivation-defective splicing variant of p53 gene in patients with chronic lymphocytic leukemia. Leukemia Research 2008; 32: 395-400.

20. Kochethu G, Delgado J, Pepper Ch, et al. Two germ line polymorphisms of the tumor suppressor gene p53 may influence the biology of chronic lmphocytic leukaemia. Leukemia Research 2006; 30: 1113-1118.

21. Lahiri O, Harris S, Packham G, Howell M. p53 pathway gene single nucleotide polymorphisms and chronic lymphocytic leukemia. Cancer Genetics and Cytogenetics 2007; 179: 36-44.

22. Flaman J-M, Frebourg T, Moreau V, et al. A simple p53 functional assay for screening cell lines, blood, and tumors. Proceedings of the National Academy of Sciences of the United States of America 1995; 92: 3963-3967.

23. Keller G, Hartmann A, Mueller J, Höfler H. Denaturing high pressure liquid chromatography (DHPLC) for the analysis of somatic p53 mutations. Laboratory Investigation 2001; 81: 1735-1737.

24. Coll-Mulet L, Santidrian A F, Cosialls A M, et al. Multiplex ligation-dependent probe amplification for detection of genomic alterations in chronic lymphocytic leukaemia. British Journal of Haematology 2008; 142: 793-801.

Labels
Haematology Internal medicine Clinical oncology
Login
Forgotten password

Enter the email address that you registered with. We will send you instructions on how to set a new password.

Login

Don‘t have an account?  Create new account

#ADS_BOTTOM_SCRIPTS#