#PAGE_PARAMS# #ADS_HEAD_SCRIPTS# #MICRODATA#

Reporting framework in the testing of predisposition to common adult solid tumors using next-generation sequencing


Authors: J. Soukupová 1;  M. Koudová 2;  L. Foretová 3;  V. Krutílková 4;  V. Curtisová 5;  I. Blaháková 6;  I. Dolinová 7;  P. Dušková 8;  L. Faldynová 9;  M. Fišer 10;  N. Friedová 11,12;  M. Gančarčíková 13;  Š. Chvojka 2;  M. Janatová 1;  M. Janíková 5;  P. Kleiblová 1,12;  K. Kyselová 14;  E. Macháčková 3;  R. Měch 15;  R. Michalovská 16;  M. Nečesánková 17;  Z. Spurná 10;  M. Šedinová 18;  M. Šenkeříková 19;  Z. Šimková 20;  J. Šimová 21;  I. Šubrt 22;  S. Tavandzis 4;  P. Tesner 23;  J. Turňová 24;  Z. Vlčková 16;  M. Vočka 12,25;  Konsorcium Czecanca 1;  pracovní skupina Onkogenetika SLG ČLS JEP 1;  Z. Kleibl 1
Authors‘ workplace: Ústav lékařské biochemie a laboratorní diagnostiky 1. LF UK a VFN v Praze 1;  GENNET a GNTlabs by GENNET, Praha 2;  Oddělení epidemiologie a genetiky nádorů, MOÚ Brno 3;  Oddělení lékařské genetiky, Laboratoře AGEL a. s., Nový Jičín 4;  Ústav lékařské genetiky FN Olomouc 5;  Centrální laboratoř genomika, CEITEC MU, Brno 6;  Oddělení genetiky a molekulární diagnostiky, Krajská nemocnice Liberec 7;  Laboratoř molekulární biologie a genetiky, Nemocnice České Budějovice, a. s. 8;  Oddělení lékařské genetiky, Ústav molekulární patologie a lékařské genetiky, FN Ostrava 9;  Lékařská genetika, Prenet, Pardubice 10;  Oddělení lékařské genetiky, FTN Praha 11;  Ústav biologie a lékařské genetiky 1. LF UK a VFN v Praze 12;  Ústav klinické biochemie a diagnostiky LF v Hradci Králové UK a FN Hradec Králové 13;  Centrum lékařské genetiky, SPADIA LAB, a. s. 14;  Fertimed, s. r. o., Olomouc 15;  Oddělení klinické genetiky, GHC Genetics, Praha 16;  Genetika Plzeň, s. r. o., Plzeň 17;  Nemocnice Jihlava, p. o., Jihlava 18;  Oddělení lékařské genetiky, FN Hradec Králové 19;  Ambulance lékařské genetiky, Nemocnice České Budějovice, a. s. 20;  EUC Laboratoře CGB a. s. 21;  Ústav lékařské genetiky LF v Plzni UK a FN Plzeň 22;  Ústav biologie a lékařské genetiky 2. LF UK a FN Motol a Homolka 23;  Oddělení lékařské genetiky, Pronatal, Praha 24;  Onkologická klinika 1. LF UK a VFN v Praze 25
Published in: Klin Onkol 2026; 39(1): 56-63
Category: Original Articles
doi: https://doi.org/10.48095/ccko202656

Overview

Background: Genetic testing for hereditary predisposition to solid tumors using next generation sequencing enables the analysis of a broad spectrum of genes and significantly increases diagnostic yield. However, expanding the scope of analyzed genomic regions also increases the likelihood of identifying so-called secondary findings, defined as pathogenic or likely pathogenic variants in genes unrelated to the primary indication for testing. These findings raise multiple practical, clinical, and ethical challenges. Material and methods: In the Czech Republic, an initiative was launched within the CZECANCA consortium and the Oncogenetics Working Group of the Society of Medical Genetics and Genomics of the Czech Medical Association of J. E. Purkyně with the aim of harmonizing the scope of reporting in cancer predisposition testing within the CZECANCA gene panel. Results: The consensus resulted in a list of genes and variants that should be routinely reported by laboratories during cancer predisposition testing, even in the absence of an explicit request from the indicating medical geneticist. Conclusion: The proposed harmonized approach to reporting secondary findings represents a practical tool for unifying laboratory practice in the Czech Republic. The document reflects the current state of knowledge in oncogenetics and will be regularly updated in response to emerging scientific evidence.

Keywords:

genetic testing – genes – high-throughput nucleotide sequencing – hereditary neoplastic syndromes – consensus


Sources

1. Spurdle AB, Greville-Heygate S, Antoniou AC et al. Towards controlled terminology for reporting germline cancer susceptibility variants: an ENIGMA report. J Med Genet 2019; 56 (6): 347–357. doi: 10.1136/jme dgenet-2018-105872.

2. Turnbull C, Achatz MI, Balmaña J et al. Breast cancer germline multigene panel testing in mainstream oncology based on clinical-public health utility: ESMO Precision Oncology Working Group recommendations. Ann Oncol 2025; 36 (8): 853865. doi: 10.1016/j.annonc.2025.04.012.

3. Michaan N, Leshno M, Safra T et al., Cost effectiveness of whole population BRCA genetic screening for cancer prevention in Israel. Cancer Prev Res (Phila) 2021; 14 (4): 455–462. doi: 10.1158/1940-6207.CAPR-20-0411.

4. Witt D, Sturm M, Stäbler A et al. Clinical genome sequencing in patients with hereditary breast and ovarian cancer: concept, implementation and benefits. Breast 2025; 82 : 104505. doi: 10.1016/j.breast.2025.

5. Lee K, Abul-Husn NS, Amendola LM et al. ACMG SF v3.3 list for reporting of secondary findings in clinical exome and genome sequencing: a policy statement of the American College of Medical Genetics and Genomics (ACMG). Genet Med 2025; 27 (8): 101454. doi: 10.1016/j.gim.2025.101454.

6. ACMG secondary finding genes and diseases. [online]. Available from: https: //search.clinicalgenome.org/kb/genes/acmgsf.

7. Gregg AR, Aarabi M, Klugman S et al. Screening for autosomal recessive and X-linked conditions during pregnancy and preconception: a practice resource of the American College of Medical Genetics and Genomics (ACMG). Genet Med 2021; 23 (10): 1793–1806. doi: 10.1038/s41436-021-01203-z.

8. Schmitz MJ, Bashar A, Soman V et al. Leveraging diverse genomic data to guide equitable carrier screening: insights from gnomAD v.4.1.0. Am J Hum Genet 2025; 112 (1): 181–195. doi: 10.1016/j.ajhg.2024.11.004.

9. Czech Cancer Panel for Clinical Application. [online]. Available from: www.czecanca.cz

10. Gordon AS, Lee K, Abul-Husn NS et al. Consideration of disease penetrance in the selection of secondary findings gene-disease pairs: a policy statement of the American College of Medical Genetics and Genomics (ACMG). Genet Med 2024; 26 (7): 101142. doi: 10.1016/j.gim.2024.101142.

11. Jackson L, Weedon MN, Green HD et al. Influence of family history on penetrance of hereditary cancers in a population setting. EClinicalMedicine 2023; 64 : 102159. doi: 10.1016/j.eclinm.2023.102159.

12. Skefos CM, Brock PL, Blouch E et al. SDHA secondary findings in germline testing: counseling and surveillance considerations. Endocr Oncol 2024; 4 (1): e230043. doi: 10.1530/EO-23-0043.

13. Onkogenetika. Pracovní skupina Společnosti lékařské genetiky (SLG). [online]. Dostupné z: www.onko -⁠ genetika.cz.

Labels
Paediatric clinical oncology Surgery Clinical oncology
Login
Forgotten password

Enter the email address that you registered with. We will send you instructions on how to set a new password.

Login

Don‘t have an account?  Create new account

#ADS_BOTTOM_SCRIPTS#