Median method for determining cortical brain activity in a near infrared spectroscopy image

Overview

Near-InfraRed-Spectroscopy (NIRS) is a neuroimaging method of brain cortical activity using low-energy optical radiation to detect local changes in (de)oxyhaemoglobin concentration. A methodology consisting of a raw signal pre-processing phase, followed by statistical analysis based on a general linear model, is currently being used to determine signal activity. The aim of this research is to define the median modification of the standard method usually used for the estimation of cortical activity from the NIRS signal and to verify its applicability in measuring motor tasks for patients with Parkinson's disease. Individual examinations were conducted in 10 cycles, during which finger tapping, and rest phases were alternating. Changes in oxyhaemoglobin concentration were calculated from the native NIRS signal using the modified Lambert-Beer equation. The signals were filtered in the 0.015–0.3 Hz band and fitted by the physiological response function of the brain tissue for each finger tapping cycle separately. The median value from the 10 cycles was then computed. Activity values obtained in individual subjects have been used in Brain Mapping visualizations. These describe motor task patterns during the ON and OFF deep brain stimulation of the subthalamic nucleus in Parkinson's disease, which demonstrates activation in accordance with the current state of knowledge in functional imaging.

Keywords:
near infrared spectroscopy, neuroimaging, Parkinson's disease, neurophotonics, brain mapping, neuromodulation

Introduction

Near-InfraRed-Spectroscopy (NIRS) is a neuroimaging method using low-energy optical radiation (800–2500 nm) to measure extinction changes in subsurface tissue caused by changes of haemoglobin concentration which correlates with cortical activity. It detects changes in concentrations of oxy- (HbO) and deoxyhaemoglobin (HbR), which are the correlates of functional brain neural activity BOLD (Blood Oxygenation Level Dependent) [1, 2]. To achieve a spatial mapping of brain activity, pairs of source-detectors are used and placed in a head cap similar to a multichannel EEG. The optimal distance between the nearest pairs of sources and detectors is 30–35 mm. The penetration depth for an adult is in between 15–25 mm [2]. The NIRS system is safe, versatile, portable and can measure most of the cortex.

The hemodynamic response function (HRF) is similar to a functional magnetic resonance (fMRI) [3]. The HR starts with a latency of 1–2 seconds after the beginning of the event and reaches a maximum after 7 seconds. The frequency band associated with cognitive or motor tasks corresponds in a range from 0.01 Hz to 0.1 Hz in NIRS imaging [4]. In comparison to a fMRI, NIRS as a medical device provides lower spatial resolution, but it has better time resolution.

In addition to measuring the physiological activity [5], sport activity [6] and pathophysiological states [7], NIRS has also been used in causal connectivity research [8].

To determine signal activity, the most commonly used methodology consists of two main phases. The first part is raw signal preprocessing, followed by the statistical analysis of the preprocessed signal based on the defined model. This leads to determining the quantitative value of activity. Generally, the NIRS signal can be considered as stochastic within one measuring state (resting state). However, the response to a stimulus appears to be deterministic in the time series. This fact is used to define the appropriate model, usually a general linear model (GLM), which is fitted to the observed signal. A detailed description, including technical details and ways to (pre)process NIRS can be found in the extensive review article [9]. Most of the above defined procedures for the complete processing pipeline including GLM are implemented in the Matlab Open Source package for Statistical Parametric Mapping (SPM) [10]. Previous phases are often subsequently visualized in the form of brain mapping. This is a topographic mapping of brain activity, where spatial (surface) properties are analyzed [11].

The aim of this research is to define the median modification of the standard method of determining cortical activity from the NIRS signal and to verify its imaging capabilities in the measurement of motor task in patients with Parkinson's disease (PD), who underwent implantation of deep brain stimulation for treatment of motor symptoms. Knowledge of cortical activity plays a key role in understanding the pathophysiology.

Methods

Clinical dataset and signals acquisition

This study includes data from the Department of Neurology, 1st Faculty of Medicine and General University Hospital in Prague. The study was conducted in compliance with the Declaration of Helsinki and was approved by the Ethics Committee of the General University Hospital in Prague. We included 9 patients with advanced PD (1F, 8M, mean age: 64.2 ± (SD) 3.4 years) chronically treated with doublesided deep brain stimulation of the subthalamic nucleus (STN-DBS 130 Hz). DBS electrodes were bilaterally implanted using standard stereotactic methods and incorporating intraoperative microelectrode recording. Every participant signed an informed consent before enrolment in the study.

Brain activity was scanned by 22 partially dependent channels of the multichannel-system NIRSport (by NIRX Medizintechnik, Berlin, Germany, Fs = 8.93 Hz), which consists of 7 sources and 8 detectors of infrared light. The device emits NIR radiation at 2 wavelengths, 760 and 850 nm. Photodetectors were arranged on the scalp using the international 10-20 EEG system for positioning: F1, FC1, CP1, FC3, F2, FC2, CP2, FC4 (Fig. 1). An accurate 3D neuroanatomic position is available through the coordinate atlas of the MNI standard (Montreal Neurological Institute). The NIRS cap was placed that the source Cz was located halfway between the nasioninion (Fig. 1, Fig. 2).

The signal was recorded in a block experiment for both STN-DBS ON and STN-DBS OFF states. Each task was repeated in 10 continuous cycles. Each cycle consisted of 15 seconds of an alternating finger motion (finger tapping) rotated by a 15-second rest phase. The start and end of the events were marked with markers in the signals.

NIRS signal preprocessing

The optical signals are strongly attenuated when passing through biological tissue. The intensity decreases by several orders of magnitude at a distance of several centimeters. A physical model derived from the modified Lambert-Beer law was used for the purposes of determining the changes in oxyhaemoglobin concentrations from raw centred signals. The following equation can be defined based on knowledge of recorded time series for 2 wavelengths and extinction coefficient values for 2 chromophores (HbO and HbR) [12]:

C_HbO denotes the HbO concentration, e_i represents the extinction coefficient of the given chromophore for a particular wavelength (Table 1), A_i corresponds to the raw signal and is proportional to the negative logarithm of the ratio of detected and emitted light intensity, L_i represents the mean free path length describing the most likely path of the photon towards the detector (set to 3 cm, see Introduction). The signals were filtered in the range from 0.015 to 0.3 Hz to attenuate slow drifts and extracerebellar artefacts generated by respiration and cardiac variation (3rd order Butterworth bandpass filter). Records with other visible movement artefacts or subjects with incomplete measurements were not included in the study.

Method for determining NIRS signal activity

The most commonly used method for determining signal activity and for examining the relationships between variables in neuroscience has become a general linear model (2), in a better interpretable case (3).

The simplest GLM design matrix consists of 2 explanatory variables: a variable containing the only ones for the computation of the absolute member and a variable for estimating the size of the experiment factor (i.e. motor task). It is determined by the value 1 in the case of a stimulus and the value 0 in its absence. The modification of the boxcar course closer to the known physiological BOLD nature of the response can be reached by convolution with Boynton HRF [13]. Estimation of parameter values β is calculated using the least squares (LS) method:

Two parameters β are normally considered for describing the signal activity in the case of the time series obtained by the NIRS technique, characterizing the entire time series for 10 cycles of the entire finger tapping examination. The innovative proposed method consists of approaching the LS fitting for 10 cycles of the motor task individually and then calculating medians from 10 pairs of estimated parameters β.

Results

Statistical properties of the proposed method

Offline scripts with the proposed median method for NIRS signal activity determination have been implemented in Matlab R2015a (Mathworks, USA). The method was applied to 396 signals (22 channels, 9 patients, 2 DBS-STN states) in the motor task of PD patients. The accuracy of the automatic procedure for the entire dataset was inspected visually during the computations. A specific example of median activity determination for the real signal is shown in the Fig. 3.

From the statistical error properties point of view, the results show that the mean value estimates are slightly deviated from zero at the expense of the median, but the method errors are symmetrical, and the normality is not too disturbed (Fig. 4). The activity values of both methods, standard GLM and proposed median GLM, do not differ for regular NIRS signals.

Clinical application of motor activity mapping

The activity values obtained within individual subjects were visualized in the form of NIRS brain mapping under ON vs. OFF DBS-STN conditions. The NIRS Brain Mapping tool was implemented on top of Matlab based on the knowledge of accurate neuroanatomical standardized MNI coordinates for individual channels. Tool NIRS Brain Mapping is based on triangulation-cubic interpolation of activity values in channels according to MNI coordinates (Fig. 5). The visualization (Fig. 6) shows that in 8 out of 9 patients, ON DBS-STN led to an increase in HbO activity in the contralateral regions of the brain during right-hand finger tapping associated with planning and performing the motion. Anatomical mapping of NIRS channels to EEG 10-20 positions was evaluated by an expert and can be performed according to Table 2.

Discussion

Study shows the design, properties and applicability of a new median method for NIRS functional changes detection in the motor cortex in PD and indicated its future use for applications that can not be done using PET or fMRI. The proposed method is based on a simple model of 2 independent regressors. For this reason, it does not have issues with the multicollinearity problem. However, we have not yet dealt with autoregression of median method residues. It offers to perform group statistics on the 2nd level and provides detailed information on the potential significance of differences between DBS-STN conditions in addition to brain mapping visualizations for ON vs. OFF, for example including the use of clinical data in the form of GLM covariates.

Currently, there are many relevant available packages, tools and libraries that can easily be integrated into the work of biomedical software programmers. They are usually downloadable via GitHub. The following list of tools for NIRS time series analysis and fMRI brain mapping is worth mentioning: NFRI toolbox [15], xTopo [16], AFNI [17], Nitime [18], NIfTI [19] and Nilearn [20]. The advantage of the proposed method over the available implementations is easy to understand; a clear algorithm of the method. Also, easy script scalability. The use of available tools often leads users to access a black box, while selfrealization helps deeper understanding of the analysis procedures. The proposed median method leads to robust estimates for irregular signals, which are often obtained from patients with advanced progressive pathophysiology. In such cases, the estimate behaves empirically better and considers the time change of the parameter β values during a block experiment.

 The unique 22-channel NIRS system has shown an increase in the activity of cortical contralateral areas associated with motion, which according to literature and the opinion of experts from the Department of Neurology, First Medical Faculty and General University Hospital in Prague is in accordance with the current state of knowledge in functional imaging [21–23].

In this study, we designed a new method for determining NIRS signal activity and scripts for its implementation were developed, including NIRS Brain Mapping visualization. In addition, for work needs, a mapping of NIRS channels into space EEG 10-20 was performed. This work contributes to the field of neuroimaging, especially for patient records, when the signal values during a block experiment have a greater variance over healthy controls. The study supports the hypothesis for NIRS applicability in various movement tasks, which cannot be examined via fMRI or PET scans and patients can only imagine it (e.g. gait). NIRS Brain Mapping source codes are released under the MIT license and are available on request.

Acknowledgement

This study is a result of activities performed within the AZV Grant no. 16-28119a project "Analysis of movement disorders for the study of extrapyramidal diseases mechanism using motion capture camera systems".

Ing. Ondřej Klempíř

Department of Biomedical Informatics

Faculty of Biomedical Engineering

Czech Technical University in Prague

Nám. Sítná 3105, CZ-272 01 Kladno

E-mail: klempond@gmail.com

Phone: +420 605 536 419